IL_5D8B_227

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_227 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1039

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5D8B|1|YC|C|779
5D8B|1|YC|A|780
5D8B|1|YC|A|781
5D8B|1|YC|A|782
5D8B|1|YC|C|783
*
5D8B|1|YC|G|799
5D8B|1|YC|G|800
5D8B|1|YC|U|801
5D8B|1|YC|A|802
5D8B|1|YC|G|803

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain HC

30S ribosomal protein S11

Chain ZC

Large subunit ribosomal RNA; LSU rRNA