IL_5D8B_228

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_228 not in the Motif Atlas

Geometric match to IL_7RQB_034

Geometric discrepancy: 0.1526

The information below is about IL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

5D8B|1|YC|U|835
5D8B|1|YC|G|836
5D8B|1|YC|G|837
*
5D8B|1|YC|C|849
5D8B|1|YC|U|850
5D8B|1|YC|G|851

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain CC

30S ribosomal protein S6

Chain OC

30S ribosomal protein S18

Chain YB

30S ribosomal protein S2