IL_5D8B_256

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_256 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.1071

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5D8B|1|YC|C|1431
5D8B|1|YC|G|1432
5D8B|1|YC|A|1433
5D8B|1|YC|A|1434
5D8B|1|YC|G|1435
*
5D8B|1|YC|C|1466
5D8B|1|YC|G|1467
5D8B|1|YC|A|1468
5D8B|1|YC|G|1469

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L19

Chain QC

30S ribosomal protein S20

Chain ZC

Large subunit ribosomal RNA; LSU rRNA