IL_5D8B_283

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5D8B|1|ZC|G|801, 5D8B|1|ZC|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_283 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.11

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5D8B|1|ZC|G|674
5D8B|1|ZC|A|675
5D8B|1|ZC|A|676
5D8B|1|ZC|A|677
5D8B|1|ZC|C|678
*
5D8B|1|ZC|G|799
5D8B|1|ZC|A|800
5D8B|1|ZC|G|801
5D8B|1|ZC|A|802
5D8B|1|ZC|U|803
5D8B|1|ZC|A|804
5D8B|1|ZC|G|805
5D8B|1|ZC|C|806

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain FB

50S ribosomal protein L15

Chain YA

50S ribosomal protein L4