IL_5D8B_300
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5D8B|1|ZC|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5D8B_300 not in the Motif Atlas
- Homologous match to IL_5J7L_277
- Geometric discrepancy: 0.1119
- The information below is about IL_5J7L_277
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5D8B|1|ZC|C|998
5D8B|1|ZC|U|999
5D8B|1|ZC|A|1000
5D8B|1|ZC|A|1001
5D8B|1|ZC|G|1002
*
5D8B|1|ZC|C|1153
5D8B|1|ZC|G|1154
5D8B|1|ZC|A|1155
5D8B|1|ZC|A|1156
5D8B|1|ZC|G|1157
Current chains
- Chain ZC
- 23S ribosomal RNA
Nearby chains
- Chain AD
- 5S ribosomal RNA; 5S rRNA
- Chain KB
- 50S ribosomal protein L20
- Chain LB
- 50S ribosomal protein L21
- Chain TB
- 50S ribosomal protein L30
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