IL_5D8B_303

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUAAGUG*CUCAG*G

Length

13 nucleotides

Bulged bases

5D8B|1|ZC|C|1142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|ZC|C|1018
5D8B|1|ZC|U|1019
5D8B|1|ZC|A|1020
5D8B|1|ZC|A|1021
5D8B|1|ZC|G|1022
5D8B|1|ZC|U|1023
5D8B|1|ZC|G|1024
*
5D8B|1|ZC|C|1140
5D8B|1|ZC|U|1141
5D8B|1|ZC|C|1142
5D8B|1|ZC|A|1143
5D8B|1|ZC|G|1144
*
5D8B|1|ZC|G|1144

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L6

Chain DB

50S ribosomal protein L13