IL_5D8B_308

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAGG*CCUUUAAAGAGUGCGUAAUAGCUCAC

Length

31 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|ZC|G|1055
5D8B|1|ZC|G|1056
5D8B|1|ZC|A|1057
5D8B|1|ZC|G|1058
5D8B|1|ZC|G|1059
*
5D8B|1|ZC|C|1079
5D8B|1|ZC|C|1080
5D8B|1|ZC|U|1081
5D8B|1|ZC|U|1082
5D8B|1|ZC|U|1083
5D8B|1|ZC|A|1084
5D8B|1|ZC|A|1085
5D8B|1|ZC|A|1086
5D8B|1|ZC|G|1087
5D8B|1|ZC|A|1088
5D8B|1|ZC|G|1089
5D8B|1|ZC|U|1090
5D8B|1|ZC|G|1091
5D8B|1|ZC|C|1092
5D8B|1|ZC|G|1093
5D8B|1|ZC|U|1094
5D8B|1|ZC|A|1095
5D8B|1|ZC|A|1096
5D8B|1|ZC|U|1097
5D8B|1|ZC|A|1098
5D8B|1|ZC|G|1099
5D8B|1|ZC|C|1100
5D8B|1|ZC|U|1101
5D8B|1|ZC|C|1102
5D8B|1|ZC|A|1103
5D8B|1|ZC|C|1104

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L6

Chain CB

50S ribosomal protein L11