IL_5D8B_330

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5D8B|1|ZC|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_330 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1337

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5D8B|1|ZC|C|1686
5D8B|1|ZC|G|1687
5D8B|1|ZC|U|1688
5D8B|1|ZC|A|1689
5D8B|1|ZC|A|1690
5D8B|1|ZC|C|1691
*
5D8B|1|ZC|G|1696
5D8B|1|ZC|G|1697
5D8B|1|ZC|A|1698
5D8B|1|ZC|G|1699
5D8B|1|ZC|A|1700
5D8B|1|ZC|A|1701
5D8B|1|ZC|G|1702

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain WA

50S ribosomal protein L2

Chain YC

Small subunit ribosomal RNA; SSU rRNA