IL_5D8B_332

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

5D8B|1|ZC|G|1801, 5D8B|1|ZC|G|1816, 5D8B|1|ZC|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_332 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0636

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5D8B|1|ZC|U|1798
5D8B|1|ZC|G|1799
5D8B|1|ZC|C|1800
5D8B|1|ZC|G|1801
5D8B|1|ZC|A|1802
5D8B|1|ZC|A|1803
5D8B|1|ZC|C|1804
*
5D8B|1|ZC|G|1813
5D8B|1|ZC|G|1814
5D8B|1|ZC|A|1815
5D8B|1|ZC|G|1816
5D8B|1|ZC|G|1817
5D8B|1|ZC|U|1818
5D8B|1|ZC|A|1819
5D8B|1|ZC|U|1820
5D8B|1|ZC|A|1821

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain WA

50S ribosomal protein L2

Chain YC

Small subunit ribosomal RNA; SSU rRNA