IL_5D8B_347

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCUGCGUAGGAUAG*CCUGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|ZC|C|2107
5D8B|1|ZC|C|2108
5D8B|1|ZC|U|2109
5D8B|1|ZC|G|2110
5D8B|1|ZC|C|2111
5D8B|1|ZC|G|2112
5D8B|1|ZC|U|2113
5D8B|1|ZC|A|2114
5D8B|1|ZC|G|2115
5D8B|1|ZC|G|2116
5D8B|1|ZC|A|2117
5D8B|1|ZC|U|2118
5D8B|1|ZC|A|2119
5D8B|1|ZC|G|2120
*
5D8B|1|ZC|C|2178
5D8B|1|ZC|C|2179
5D8B|1|ZC|U|2180
5D8B|1|ZC|G|2181
5D8B|1|ZC|G|2182

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain BD

Transfer RNA; tRNA

Chain UC

Small subunit ribosomal RNA; SSU rRNA