IL_5D8B_350

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUGUGAACCC*GGGGGAG

Length

17 nucleotides

Bulged bases

5D8B|1|ZC|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_350 not in the Motif Atlas

Geometric match to IL_4V88_508

Geometric discrepancy: 0.3813

The information below is about IL_4V88_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99095.1

Basepair signature

cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5D8B|1|ZC|C|2129
5D8B|1|ZC|U|2130
5D8B|1|ZC|G|2131
5D8B|1|ZC|U|2132
5D8B|1|ZC|G|2133
5D8B|1|ZC|A|2134
5D8B|1|ZC|A|2135
5D8B|1|ZC|C|2136
5D8B|1|ZC|C|2137
5D8B|1|ZC|C|2138
*
5D8B|1|ZC|G|2153
5D8B|1|ZC|G|2154
5D8B|1|ZC|G|2155
5D8B|1|ZC|G|2156
5D8B|1|ZC|G|2157
5D8B|1|ZC|A|2158
5D8B|1|ZC|G|2159

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain UC

Small subunit ribosomal RNA; SSU rRNA