IL_5D8B_353

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

5D8B|1|ZC|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_353 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.5311

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5D8B|1|ZC|U|2401
5D8B|1|ZC|C|2402
5D8B|1|ZC|C|2403
*
5D8B|1|ZC|G|2414
5D8B|1|ZC|G|2415

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain FB

50S ribosomal protein L15

Chain VB

50S ribosomal protein L33

Chain XB

50S ribosomal protein L35