IL_5D8B_357

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_357 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.1819

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

5D8B|1|ZC|A|2459
5D8B|1|ZC|U|2460
5D8B|1|ZC|C|2461
*
5D8B|1|ZC|G|2489
5D8B|1|ZC|G|2490
5D8B|1|ZC|U|2491
5D8B|1|ZC|U|2492
5D8B|1|ZC|U|2493

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain GB

50S ribosomal protein L16