IL_5D8B_373

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUGUAAG*UUGAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|ZC|G|2846
5D8B|1|ZC|U|2847
5D8B|1|ZC|G|2848
5D8B|1|ZC|U|2849
5D8B|1|ZC|A|2850
5D8B|1|ZC|A|2851
5D8B|1|ZC|G|2852
*
5D8B|1|ZC|U|2865
5D8B|1|ZC|U|2866
5D8B|1|ZC|G|2867
5D8B|1|ZC|A|2868
5D8B|1|ZC|G|2869
5D8B|1|ZC|C|2870

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain HB

50S ribosomal protein L17

Chain JB

50S ribosomal protein L19

Chain YC

Small subunit ribosomal RNA; SSU rRNA