IL_5D8B_375
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GUUCCC*GAACAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5D8B_375 not in the Motif Atlas
- Homologous match to IL_7A0S_105
- Geometric discrepancy: 0.3812
- The information below is about IL_7A0S_105
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
5D8B|1|AD|G|33
5D8B|1|AD|U|34
5D8B|1|AD|U|35
5D8B|1|AD|C|36
5D8B|1|AD|C|37
5D8B|1|AD|C|38
*
5D8B|1|AD|G|44
5D8B|1|AD|A|45
5D8B|1|AD|A|46
5D8B|1|AD|C|47
5D8B|1|AD|A|48
5D8B|1|AD|C|49
Current chains
- Chain AD
- 5S ribosomal RNA
Nearby chains
- Chain IB
- 50S ribosomal protein L18
- Chain ZA
- 50S ribosomal protein L5
- Chain ZC
- Large subunit ribosomal RNA; LSU rRNA
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