IL_5D8B_379

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGAAGAAGCC*GGUGUAAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|UC|G|409
5D8B|1|UC|G|410
5D8B|1|UC|A|411
5D8B|1|UC|A|412
5D8B|1|UC|G|413
5D8B|1|UC|A|414
5D8B|1|UC|A|415
5D8B|1|UC|G|416
5D8B|1|UC|C|417
5D8B|1|UC|C|418
*
5D8B|1|UC|G|425
5D8B|1|UC|G|426
5D8B|1|UC|U|427
5D8B|1|UC|G|428
5D8B|1|UC|U|429
5D8B|1|UC|A|430
5D8B|1|UC|A|431
5D8B|1|UC|A|432
5D8B|1|UC|C|433

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain EA

30S ribosomal protein S4