IL_5D8B_407

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

AGUUG*CACUCU

Length

11 nucleotides

Bulged bases

5D8B|1|YC|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|YC|A|1123
5D8B|1|YC|G|1124
5D8B|1|YC|U|1125
5D8B|1|YC|U|1126
5D8B|1|YC|G|1127
*
5D8B|1|YC|C|1145
5D8B|1|YC|A|1146
5D8B|1|YC|C|1147
5D8B|1|YC|U|1148
5D8B|1|YC|C|1149
5D8B|1|YC|U|1150

Current chains

Chain YC

16S ribosomal RNA

Nearby chains

Chain FC

30S ribosomal protein S9

Chain GC

30S ribosomal protein S10