IL_5D8B_410

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUCGGACACC*GGUGAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5D8B|1|ZC|C|273|||E
5D8B|1|ZC|U|273|||F
5D8B|1|ZC|C|273|||G
5D8B|1|ZC|G|274
5D8B|1|ZC|G|275
5D8B|1|ZC|A|276
5D8B|1|ZC|C|277
5D8B|1|ZC|A|278
5D8B|1|ZC|C|279
5D8B|1|ZC|C|280
*
5D8B|1|ZC|G|360
5D8B|1|ZC|G|361
5D8B|1|ZC|U|362
5D8B|1|ZC|G|363|||A
5D8B|1|ZC|A|363|||B
5D8B|1|ZC|G|363|||C

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains