IL_5D8B_416

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5D8B_416 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3957

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5D8B|1|ZC|C|2466
5D8B|1|ZC|C|2467
5D8B|1|ZC|G|2468
5D8B|1|ZC|A|2469
5D8B|1|ZC|G|2470
5D8B|1|ZC|C|2471
*
5D8B|1|ZC|G|2479
5D8B|1|ZC|C|2480
5D8B|1|ZC|G|2481
5D8B|1|ZC|G|2482
5D8B|1|ZC|C|2483
5D8B|1|ZC|G|2484

Current chains

Chain ZC

23S ribosomal RNA

Nearby chains

Chain GB

50S ribosomal protein L16

Chain PB

50S ribosomal protein L25