IL_5DAR_001
3D structure
- PDB id
- 5DAR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5DAR|1|A|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAR_001 not in the Motif Atlas
- Homologous match to IL_4V9F_042
- Geometric discrepancy: 0.1522
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5DAR|1|A|C|1153
5DAR|1|A|U|1154
5DAR|1|A|A|1155
5DAR|1|A|A|1156
5DAR|1|A|G|1157
5DAR|1|A|A|1158
5DAR|1|A|C|1159
5DAR|1|A|A|1160
5DAR|1|A|G|1161
*
5DAR|1|A|U|1218
5DAR|1|A|C|1219
5DAR|1|A|G|1220
5DAR|1|A|A|1221
5DAR|1|A|G|1222
Current chains
- Chain A
- 74 nt fragment of 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L10
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L10
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