IL_5DAR_004

3D structure

PDB id

5DAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5DAR|1|D|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAR_004 not in the Motif Atlas

Homologous match to IL_4V9F_042

Geometric discrepancy: 0.1898

The information below is about IL_4V9F_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.3

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5DAR|1|D|C|1153
5DAR|1|D|U|1154
5DAR|1|D|A|1155
5DAR|1|D|A|1156
5DAR|1|D|G|1157
5DAR|1|D|A|1158
5DAR|1|D|C|1159
5DAR|1|D|A|1160
5DAR|1|D|G|1161
*
5DAR|1|D|U|1218
5DAR|1|D|C|1219
5DAR|1|D|G|1220
5DAR|1|D|A|1221
5DAR|1|D|G|1222

Current chains

Chain D

74 nt fragment of 23S rRNA

Nearby chains

Chain E

50S ribosomal protein L10