IL_5DAR_005

3D structure

PDB id

5DAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

5DAR|1|D|U|1171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAR_005 not in the Motif Atlas

Homologous match to IL_5D8H_002

Geometric discrepancy: 0.0961

The information below is about IL_5D8H_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

5DAR|1|D|G|1169
5DAR|1|D|U|1170
5DAR|1|D|U|1171
5DAR|1|D|G|1172
*
5DAR|1|D|C|1186
5DAR|1|D|A|1187
5DAR|1|D|U|1188
5DAR|1|D|C|1189

Current chains

Chain D

74 nt fragment of 23S rRNA

Nearby chains

Chain B

50S ribosomal protein L10

Chain E

50S ribosomal protein L10

Chain F

50S ribosomal protein L11