IL_5DAT_065

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

5DAT|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_065 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.2664

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5DAT|1|1|G|1623
5DAT|1|1|G|1624
5DAT|1|1|A|1625
*
5DAT|1|1|U|1818
5DAT|1|1|U|1819
5DAT|1|1|U|1820
5DAT|1|1|U|1821
5DAT|1|1|C|1822

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain O4

60S ribosomal protein L34-A (eL34)