IL_5DAT_146

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5DAT|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_146 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.0947

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5DAT|1|2|G|143
5DAT|1|2|U|144
5DAT|1|2|A|145
5DAT|1|2|U|146
5DAT|1|2|A|147
5DAT|1|2|A|148
5DAT|1|2|C|149
*
5DAT|1|2|G|165
5DAT|1|2|C|166
5DAT|1|2|U|167
5DAT|1|2|A|168
5DAT|1|2|A|169
5DAT|1|2|U|170
5DAT|1|2|A|171
5DAT|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A