IL_5DAT_151

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_151 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.2541

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

5DAT|1|2|C|270
5DAT|1|2|A|271
5DAT|1|2|U|272
5DAT|1|2|G|273
*
5DAT|1|2|U|283
5DAT|1|2|G|284
5DAT|1|2|G|285

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A