Motif IL_47298.1 Version IL_47298.1 of this group appears in releases 3.80 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4V88_400 | 4V88 | 0.3176 | 0 | A6 | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | ||
2 | IL_8C3A_408 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | C | 268 | A | 269 | U | 270 | G | 271 | * | U | 281 | G | 282 | G | 283 | cWW | ncSW | ncWW | |
3 | IL_4KQY_005 | 4KQY | 0.7670 | 1 | A | SAM-I riboswitch | U | 52 | G | 53 | A | 55 | A | 56 | * | U | 69 | G | 70 | A | 71 | cWW | ncWB | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAUG*UGG | 2 |
UGUAA*UGA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AU*G | 2 |
GUA*G | 1 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.32 | Avg 0.42 | Max 0.80
Coloring options: