IL_5DAT_186

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_186 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0711

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5DAT|1|2|G|1111
5DAT|1|2|G|1112
5DAT|1|2|A|1113
5DAT|1|2|G|1114
5DAT|1|2|U|1115
5DAT|1|2|A|1116
5DAT|1|2|U|1117
5DAT|1|2|G|1118
*
5DAT|1|2|U|1129
5DAT|1|2|G|1130
5DAT|1|2|A|1131
5DAT|1|2|A|1132
5DAT|1|2|A|1133
5DAT|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

60S ribosomal protein L41-A