IL_5DAT_293
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_293 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.0779
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
5DAT|1|5|G|1492
5DAT|1|5|G|1493
5DAT|1|5|U|1494
5DAT|1|5|U|1495
*
5DAT|1|5|A|1835
5DAT|1|5|C|1836
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain n5
- 60S ribosomal protein L25
- Chain o4
- 60S ribosomal protein L34-A (eL34)
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
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