3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
5DAT|1|5|A|2971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_345 not in the Motif Atlas
Geometric match to IL_2VPL_002
Geometric discrepancy: 0.2901
The information below is about IL_2VPL_002
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

5DAT|1|5|C|2960
5DAT|1|5|G|2961
*
5DAT|1|5|C|2970
5DAT|1|5|A|2971
5DAT|1|5|G|2972

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain f
Eukaryotic translation initiation factor 5A-1
Chain l2
60S ribosomal protein L2-A

Coloring options:


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