IL_5DAT_404

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_404 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.1175

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5DAT|1|6|G|703
5DAT|1|6|C|704
5DAT|1|6|U|705
5DAT|1|6|A|706
5DAT|1|6|A|707
5DAT|1|6|C|708
*
5DAT|1|6|G|730
5DAT|1|6|C|731
5DAT|1|6|G|732
5DAT|1|6|A|733
5DAT|1|6|A|734
5DAT|1|6|C|735

Current chains

Chain 6

18S ribosomal RNA

Nearby chains