IL_5DAT_418
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 5DAT|1|6|C|1096, 5DAT|1|6|U|1098, 5DAT|1|6|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_418 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.0919
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DAT|1|6|C|1034
5DAT|1|6|G|1035
5DAT|1|6|A|1036
*
5DAT|1|6|U|1095
5DAT|1|6|C|1096
5DAT|1|6|U|1097
5DAT|1|6|U|1098
5DAT|1|6|U|1099
5DAT|1|6|G|1100
5DAT|1|6|G|1101
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain c3
- 40S ribosomal protein S13
- Chain d1
- 40S ribosomal protein S21-A
- Chain d2
- 40S ribosomal protein S22-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain d7
- 40S ribosomal protein S27-A
- Chain s2
- 40S ribosomal protein S2
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