3D structure

PDB id
5DAT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with hypusine-containing eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.15 Å

Loop

Sequence
GCCAGCGA*UUGUGAAAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DAT_439 not in the Motif Atlas
Homologous match to IL_4V88_459
Geometric discrepancy: 0.0725
The information below is about IL_4V88_459
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_10447.1
Basepair signature
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
Number of instances in this motif group
2

Unit IDs

5DAT|1|6|G|1480
5DAT|1|6|C|1481
5DAT|1|6|C|1482
5DAT|1|6|A|1483
5DAT|1|6|G|1484
5DAT|1|6|C|1485
5DAT|1|6|G|1486
5DAT|1|6|A|1487
*
5DAT|1|6|U|1519
5DAT|1|6|U|1520
5DAT|1|6|G|1521
5DAT|1|6|U|1522
5DAT|1|6|G|1523
5DAT|1|6|A|1524
5DAT|1|6|A|1525
5DAT|1|6|A|1526
5DAT|1|6|C|1527

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain c6
40S ribosomal protein S16-A
Chain c9
40S ribosomal protein S19-A
Chain d0
40S ribosomal protein S20
Chain d5
40S ribosomal protein S25-A
Chain d9
40S ribosomal protein S29-A
Chain s3
40S ribosomal protein S3
Chain s5
40S ribosomal protein S5

Coloring options:


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