IL_5DAT_439
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_439 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.0725
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DAT|1|6|G|1480
5DAT|1|6|C|1481
5DAT|1|6|C|1482
5DAT|1|6|A|1483
5DAT|1|6|G|1484
5DAT|1|6|C|1485
5DAT|1|6|G|1486
5DAT|1|6|A|1487
*
5DAT|1|6|U|1519
5DAT|1|6|U|1520
5DAT|1|6|G|1521
5DAT|1|6|U|1522
5DAT|1|6|G|1523
5DAT|1|6|A|1524
5DAT|1|6|A|1525
5DAT|1|6|A|1526
5DAT|1|6|C|1527
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- 40S ribosomal protein S20
- Chain d5
- 40S ribosomal protein S25-A
- Chain d9
- 40S ribosomal protein S29-A
- Chain s3
- 40S ribosomal protein S3
- Chain s5
- 40S ribosomal protein S5
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