IL_5DAT_480

3D structure

PDB id

5DAT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

5DAT|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DAT_480 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.3193

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

5DAT|1|2|U|893
5DAT|1|2|U|894
5DAT|1|2|G|895
5DAT|1|2|U|896
5DAT|1|2|C|897
5DAT|1|2|A|898
5DAT|1|2|G|899
*
5DAT|1|2|C|910
5DAT|1|2|U|911
5DAT|1|2|U|912
5DAT|1|2|G|913
5DAT|1|2|G|914
5DAT|1|2|A|915
5DAT|1|2|U|916
5DAT|1|2|U|917
5DAT|1|2|U|918
5DAT|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain C4

40S ribosomal protein S14-A

Chain S1

40S ribosomal protein S1-A