IL_5DAT_499
3D structure
- PDB id
- 5DAT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- CACAC*GCGUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DAT_499 not in the Motif Atlas
- Homologous match to IL_8P9A_349
- Geometric discrepancy: 0.2845
- The information below is about IL_8P9A_349
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
5DAT|1|1|C|3162
5DAT|1|1|A|3163
5DAT|1|1|C|3164
5DAT|1|1|A|3165
5DAT|1|1|C|3166
*
5DAT|1|1|G|3284
5DAT|1|1|C|3285
5DAT|1|1|G|3286
5DAT|1|1|U|3287
5DAT|1|1|G|3288
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: