IL_5DC3_197

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5DC3|1|2|A|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_197 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.1251

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5DC3|1|2|C|1280
5DC3|1|2|G|1281
*
5DC3|1|2|C|1426
5DC3|1|2|A|1427
5DC3|1|2|G|1428

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D0

40S ribosomal protein S20

Chain D9

40S ribosomal protein S29-A

Chain S3

40S ribosomal protein S3

Chain SM

Suppressor protein STM1