IL_5DC3_406

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_406 not in the Motif Atlas

Homologous match to IL_4V88_422

Geometric discrepancy: 0.1419

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5DC3|1|6|C|708
5DC3|1|6|C|709
5DC3|1|6|U|710
5DC3|1|6|U|711
5DC3|1|6|G|712
*
5DC3|1|6|C|726
5DC3|1|6|U|727
5DC3|1|6|U|728
5DC3|1|6|G|729
5DC3|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains