IL_5DC3_466
3D structure
- PDB id
- 5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with non-modified eIF5A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DC3_466 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0538
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5DC3|1|8|A|44
5DC3|1|8|C|45
5DC3|1|8|G|46
5DC3|1|8|C|47
5DC3|1|8|A|48
5DC3|1|8|G|49
5DC3|1|8|C|50
5DC3|1|8|G|51
5DC3|1|8|A|52
5DC3|1|8|A|53
5DC3|1|8|A|54
5DC3|1|8|U|55
5DC3|1|8|G|56
5DC3|1|8|C|57
5DC3|1|8|G|58
5DC3|1|8|A|59
5DC3|1|8|U|60
5DC3|1|8|A|61
5DC3|1|8|C|62
5DC3|1|8|G|63
5DC3|1|8|U|64
*
5DC3|1|8|A|96
5DC3|1|8|A|97
5DC3|1|8|U|98
5DC3|1|8|C|99
5DC3|1|8|U|100
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n5
- 60S ribosomal protein L25
- Chain o5
- 60S ribosomal protein L35-A
- Chain o7
- 60S ribosomal protein L37-A
- Chain o9
- 60S ribosomal protein L39
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