3D structure

PDB id
5DC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of yeast 80S ribosome with non-modified eIF5A
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
CUUG*CGUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DC3_471 not in the Motif Atlas
Geometric match to IL_3WBM_002
Geometric discrepancy: 0.2265
The information below is about IL_3WBM_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

5DC3|1|1|C|1069
5DC3|1|1|U|1070
5DC3|1|1|U|1071
5DC3|1|1|G|1072
*
5DC3|1|1|C|1086
5DC3|1|1|G|1087
5DC3|1|1|U|1088
5DC3|1|1|G|1089

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain N1
60S ribosomal protein L21-A
Chain N9
60S ribosomal protein L29

Coloring options:


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