IL_5DC3_477

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGCC*GUGCU

Length

9 nucleotides

Bulged bases

5DC3|1|2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_477 not in the Motif Atlas

Geometric match to IL_7R9G_002

Geometric discrepancy: 0.3273

The information below is about IL_7R9G_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5DC3|1|2|G|273
5DC3|1|2|G|274
5DC3|1|2|C|275
5DC3|1|2|C|276
*
5DC3|1|2|G|279
5DC3|1|2|U|280
5DC3|1|2|G|281
5DC3|1|2|C|282
5DC3|1|2|U|283

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S6

40S ribosomal protein S6-A