IL_5DC3_513

3D structure

PDB id

5DC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with non-modified eIF5A

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

5DC3|1|5|C|1016, 5DC3|1|5|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DC3_513 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.3387

The information below is about IL_7DLZ_003

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5DC3|1|5|U|1014
5DC3|1|5|U|1015
5DC3|1|5|C|1016
5DC3|1|5|C|1017
5DC3|1|5|G|1018
*
5DC3|1|5|U|1034
5DC3|1|5|G|1035
5DC3|1|5|A|1036

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1