IL_5DCV_006

3D structure

PDB id

5DCV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of PhoRpp38-SL12M complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*CUAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform with intercalated tWH

Broad Annotation

No text annotation

Motif group

IL_14368.1

Basepair signature

cWW-L-cWW-cSH

Number of instances in this motif group

6

Unit IDs

5DCV|1|D|U|5
5DCV|1|D|G|6
*
5DCV|1|D|C|45
5DCV|1|D|U|46
5DCV|1|D|A|47
5DCV|1|D|A|48

Current chains

Chain D

RNA (47-MER)

Nearby chains

Chain A

50S ribosomal protein L7Ae

Chain B

RNA (47-MER)