5DCV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5DCV_001 | 1/B/26:31 | GNRA | geometric HL_5DCV_002 HL_37824.7 | |
| HL_5DCV_002 | 1/D/26:31 | GNRA HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5DCV_001 | 1/B/3:5, 1/B/48:49 | Major groove intercalation | geometric IL_1U6B_010 IL_07039.3 | |
| IL_5DCV_009 | 1/B/3:6, 1/B/45:49 | No text annotation | geometric IL_5DCV_010 IL_67767.4 | |
| IL_5DCV_002 | 1/B/5:6, 1/B/45:48 | Major groove platform with intercalated tWH | geometric IL_5DCV_006 IL_14368.1 | |
| IL_5DCV_004 | 1/B/18:25, 1/B/32:35 | Kink-turn | geometric IL_5DCV_008 IL_74051.1 | |
| IL_5DCV_005 | 1/D/3:5, 1/D/48:49 | Major groove intercalation IL_07039.3 | ||
| IL_5DCV_010 | 1/D/3:6, 1/D/45:49 | No text annotation IL_67767.4 | ||
| IL_5DCV_006 | 1/D/5:6, 1/D/45:48 | Major groove platform with intercalated tWH IL_14368.1 | ||
| IL_5DCV_008 | 1/D/18:25, 1/D/32:35 | Kink-turn IL_74051.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5DCV_003 | No text annotation | ||
| IL_5DCV_007 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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