IL_5DCV_010
3D structure
- PDB id
- 5DCV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of PhoRpp38-SL12M complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UAUG*CUAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- Receptor of 11-nt loop-receptor motif
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_92541.1
- Basepair signature
- cWW-tWH-R-cSH-cWW
- Number of instances in this motif group
- 11
Unit IDs
5DCV|1|D|U|3
5DCV|1|D|A|4
5DCV|1|D|U|5
5DCV|1|D|G|6
*
5DCV|1|D|C|45
5DCV|1|D|U|46
5DCV|1|D|A|47
5DCV|1|D|A|48
5DCV|1|D|G|49
Current chains
- Chain D
- RNA (47-MER)
Nearby chains
- Chain A
- 50S ribosomal protein L7Ae
- Chain B
- RNA (47-MER)
Coloring options: