IL_5DDP_001

3D structure

PDB id

5DDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

L-glutamine riboswitch bound with L-glutamine

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GAAGUAA*UGAAGCAACGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_20463.1

Basepair signature

cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

5DDP|1|A|G|23
5DDP|1|A|A|24
5DDP|1|A|A|25
5DDP|1|A|G|26
5DDP|1|A|U|27
5DDP|1|A|A|28
5DDP|1|A|A|29
*
5DDP|1|A|U|50
5DDP|1|A|G|51
5DDP|1|A|A|52
5DDP|1|A|A|53
5DDP|1|A|G|54
5DDP|1|A|C|55
5DDP|1|A|A|56
5DDP|1|A|A|57
5DDP|1|A|C|58
5DDP|1|A|G|59
5DDP|1|A|C|60

Current chains

Chain A

RNA (61-MER)

Nearby chains

Chain D

U1 small nuclear ribonucleoprotein A