IL_5DDP_002

3D structure

PDB id

5DDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

L-glutamine riboswitch bound with L-glutamine

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GAAGUAA*UGAAGCAACGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06650.1

Basepair signature

cWW-L-R-R-R-cWH-R-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5DDP|1|B|G|23
5DDP|1|B|A|24
5DDP|1|B|A|25
5DDP|1|B|G|26
5DDP|1|B|U|27
5DDP|1|B|A|28
5DDP|1|B|A|29
*
5DDP|1|B|U|50
5DDP|1|B|G|51
5DDP|1|B|A|52
5DDP|1|B|A|53
5DDP|1|B|G|54
5DDP|1|B|C|55
5DDP|1|B|A|56
5DDP|1|B|A|57
5DDP|1|B|C|58
5DDP|1|B|G|59
5DDP|1|B|C|60

Current chains

Chain B

RNA (61-MER)

Nearby chains

Chain A

Glutamine riboswitch; glnA

Chain C

U1 small nuclear ribonucleoprotein A

Chain D

U1 small nuclear ribonucleoprotein A