IL_5DER_002
3D structure
- PDB id
- 5DER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA oligonucleotide containing (R)-C5'-ME-2'F U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 1.8 Å
Loop
- Sequence
- AAU*AAU(U5R)*U
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DER_002 not in the Motif Atlas
- Geometric match to IL_333D_001
- Geometric discrepancy: 0.3731
- The information below is about IL_333D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5DER|1|C|A|103
5DER|1|C|A|104
5DER|1|C|U|106
*
5DER|1|D|A|211
5DER|1|D|A|212
5DER|1|D|U|214
5DER|1|D|U5R|213
*
5DER|1|D|U|214
Current chains
- Chain C
- RNA oligonucleotide containing (R)-C5'-Me-2'-FU
- Chain D
- RNA oligonucleotide containing (R)-C5'-Me-2'-FU
Nearby chains
- Chain A
- RNA oligonucleotide containing (R)-C5'-Me-2'-FU
- Chain B
- RNA oligonucleotide containing (R)-C5'-Me-2'-FU
Coloring options: