3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
5DFE|1|QA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DFE_031 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.0872
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

5DFE|1|QA|G|683
5DFE|1|QA|A|684
5DFE|1|QA|G|685
5DFE|1|QA|U|686
5DFE|1|QA|A|687
5DFE|1|QA|G|688
*
5DFE|1|QA|C|699
5DFE|1|QA|G|700
5DFE|1|QA|C|701
5DFE|1|QA|A|702
5DFE|1|QA|G|703
5DFE|1|QA|A|704
5DFE|1|QA|U|705
5DFE|1|QA|A|706
5DFE|1|QA|C|707

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QK
30S ribosomal protein S11
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5786 s