IL_5DFE_192

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_192 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0825

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5DFE|1|XA|G|450
5DFE|1|XA|A|451
5DFE|1|XA|A|452
5DFE|1|XA|A|453
5DFE|1|XA|C|454
5DFE|1|XA|C|455
*
5DFE|1|XA|G|476
5DFE|1|XA|A|477
5DFE|1|XA|C|479
5DFE|1|XA|U|480
5DFE|1|XA|G|481
5DFE|1|XA|A|482
5DFE|1|XA|C|483

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16