3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCA*UUCCC
Length
8 nucleotides
Bulged bases
5DFE|1|XA|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DFE_210 not in the Motif Atlas
Homologous match to IL_5J7L_041
Geometric discrepancy: 0.0925
The information below is about IL_5J7L_041
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_47078.3
Basepair signature
cWW-cWS-L-cWW-L
Number of instances in this motif group
4

Unit IDs

5DFE|1|XA|G|933
5DFE|1|XA|C|934
5DFE|1|XA|A|935
*
5DFE|1|XA|U|1380
5DFE|1|XA|U|1381
5DFE|1|XA|C|1382
5DFE|1|XA|C|1383
5DFE|1|XA|C|1384

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XG
30S ribosomal protein S7
Chain XI
30S ribosomal protein S9
Chain XV
Transfer RNA; tRNA

Coloring options:


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