IL_5DFE_227

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

5DFE|1|XA|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_227 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0866

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5DFE|1|XA|C|1399
5DFE|1|XA|5MC|1400
5DFE|1|XA|G|1401
*
5DFE|1|XA|C|1501
5DFE|1|XA|A|1502
5DFE|1|XA|A|1503
5DFE|1|XA|G|1504

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XX

messenger RNA

Chain XY

Peptide chain release factor 2